The Allen Mouse Brain Common Coordinate Framework (CCFv3), a 3D reference atlas, is based on an average of the inherent fluorescence in the brains of mice imaged using serial two-photon tomography.

The Allen Mouse Brain Common Coordinate Framework (CCFv3), a 3D reference atlas, is based on an average of the inherent fluorescence in the brains of mice imaged using serial two-photon tomography.

Registration of the MERFISH-derived cell atlas to the Allen Mouse Brain Common Coordinate Framework allows systematic quantification of cell-type composition and organization in every brain region ...

Travel through the mouse brain atlas from front to back; the multicolored streamlines show the shortest path to the brain surface at each point, and the red and gold colors show the dendrites of L5 ...